SpaceExpress enables differential spatial transcriptomics with natural coordinate systems
Yeojin Kim, Abhishek Ojha, Alex W. Schrader, Juyeon Lee, Zijun Wu, Ian M. Traniello, Saumya Jain, Gene E. Robinson, Hee Sun Han, Sihai Dave Zhao, Saurabh Sinha
SpaceExpress detects phenotype-associated spatial gene expression differences using a neural network and spline regression across multiple spatial transcriptomics datasets.
bioRxiv · Dec 19, 2024 · PreprintBioinformatics