Author

Hongyi Ji

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Zhaorong LiiD· 2 shared Bing Deng· 1 shared Chunhua Lin· 1 shared Huanming YangiD· 1 shared Huimin LiiD· 1 shared Jianmin Wu· 1 shared Quyu KongiD· 1 shared Sheng LiuiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Zhaorong LiORCID

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2 papers

Recent·Most cited

A Benchmark of Evo2 Genomic AI Models for Efficient and Practical Deployment

Huimin Li, Hongyi Ji, Yuchen Zeng, Wei Lv, Jianmin Wu, Sheng Liu, Chunhua Lin, Huanming Yang, Zhaorong Li, Yubao Chen, Wei Dong

This paper benchmarks the Evo2 genomic AI model in cancer genomics, showing FP8 precision on H800 GPUs improves inference speed and accuracy, while larger models perform worse on non-FP8 hardware.

bioRxiv · Sep 10, 2025 · PreprintGenomics

BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow

Xin Qi, Quyu Kong, Hongyi Ji, Yue Shen, Yuqi Liu, Yan Feng Sun, Zhilin Zhang, Zhaorong Li, Xunlong Xia, Bing Deng, Yinqi Bai

This paper introduces BIA, an intelligent agent using LLMs to automate bioinformatics tasks, demonstrating its effectiveness with scRNA-seq data and outlining strategies for improvement.

bioRxiv · May 22, 2024 · PreprintBioinformatics