TypeAssembly: Copy number estimation and allele typing for haplotype assemblies
Hong-Sheng Lai, Y Liu, Hsien-Chun Chiu, Ting-Yu Chang, Hsin-Fu Lin, Yi-Hsuan Tseng, Tsung-Kai Hung, Sheng-Kai Lai, Jacob Shujui Hsu, Chia‐Lang Hsu, Ya‐Chien Yang, Pei‐Lung Chen, Chien‐Yu Chen
TypeAssembly annotates complex genes in haplotype assemblies by estimating copy numbers and typing alleles, successfully applied to 41 genes, 17 KIR genes, and 15 pharmacogenes across 466 assemblies.
bioRxiv · Sep 13, 2025 · PreprintBioinformatics