Author

J. F. Atkins

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Vallesi· 1 shared G. Manning· 1 shared M. A. Moldovan· 1 shared M. S. Gelfand· 1 shared P. Baranov· 1 shared S. A. Gaydukova· 1 shared S. Heaphy· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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1 shared paperEvolutionary Biology

A. Vallesi

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2 papers

Recent·Most cited

Non-triplet genetic code in Euplotes ciliates is a result of neutral evolution

S. A. Gaydukova, M. A. Moldovan, A. Vallesi, S. Heaphy, J. F. Atkins, M. S. Gelfand, P. Baranov

The paper investigates the evolution of frameshifting in Euplotes ciliates, finding that frameshift gains exceed losses by 10-fold and that this asymmetry is due to mutation rates, not selection.

bioRxiv · Oct 12, 2022 · PreprintEvolutionary Biology

An RNA sequence that reprograms ribosomes to bypass a 50 nucleotide coding gap is encoded by a mobile element whose sequence conservation illuminates its bypass mechanisms

G. Manning, J. F. Atkins

The paper identifies an RNA sequence in a mobile element that enables ribosomes to bypass a 50-nucleotide coding gap, revealing evolutionary insights into translational recoding mechanisms.

bioRxiv · Aug 31, 2022 · PreprintBiochemistry