Author

J. Martinez-Gomez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:plant (other)· 2 Approach:Bayesian inference· 1 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

C. D. Specht· 3 shared C. J. Rothfels· 2 shared C. M. Tribble· 2 shared A. A. Bennett· 1 shared A. T. Weigle· 1 shared B. T. Kopperud· 1 shared D. Shukla· 1 shared F. Alzate-Guarin· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersPlant Biology

C. D. Specht

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3 papers

Recent·Most cited

Commonly used Bayesian diversification-rate models produce biologically meaningful differences on empirical phylogenies

J. Martinez-Gomez, M. J. Song, C. M. Tribble, B. T. Kopperud, S. Höhna, W. A. Freyman, C. D. Specht, C. J. Rothfels

This paper compares five Bayesian methods for inferring diversification rate shifts on empirical phylogenies and finds they produce different results due to model differences.

bioRxiv · May 17, 2023Evolutionary Biology

Multiple routes of functional diversification of the plant BAHD acyltransferase family revealed by comparative biochemical and genomic analyses

L. H. Kruse, A. T. Weigle, M. Irfan, J. Martinez-Gomez, J. D. Chobirko, J. E. Schaffer, A. A. Bennett, C. D. Specht, J. M. Jez, D. Shukla, G. D. Moghe

The paper investigates how the BAHD acyltransferase family evolved to use diverse substrates through phylogenetics, biochemistry, and protein structure analysis.

bioRxiv · Nov 18, 2020 · PreprintPlant Biology

Comparative transcriptomics of a monocotyledonous geophyte reveals shared molecular mechanisms of underground storage organ formation.

C. M. Tribble, J. Martinez-Gomez, F. Alzate-Guarin, C. J. Rothfels, C. D. Specht

This study uses transcriptomics to compare molecular mechanisms of tuberous root formation in Bomarea multiflora with other underground storage organs across plant lineages, identifying shared genes and pathways.

bioRxiv · Sep 20, 2020Plant Biology