Author

J. R. Herr

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Plant Biology· 2 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 6 Approach:statistical model· 5 Research Focus:ecology & biodiversity· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Organism:plant (other)· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

E. H. Graham· 3 shared J. Clarke· 3 shared S. Fernando· 3 shared J. C. Schnable· 2 shared J. Yang· 2 shared M. A. Meier· 2 shared M. G. Lopez-Guerrero· 2 shared M. S. Adamowicz· 2 shared

Activity by Year

2020-2022 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersMicrobiology

E. H. Graham

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Diversity, abundance, and host specificity of the human skin associated circular and single stranded DNA virome

E. H. Graham, M. S. Adamowicz, P. C. Angeletti, J. Clarke, S. Fernando, J. R. Herr

The paper characterizes the circular single-stranded DNA virome of human skin, identifying novel viruses and revealing their host range and sequence stability.

bioRxiv · May 22, 2022 · PreprintMicrobiology

Maize root-associated microbes likely under adaptive selection by the host to enhance phenotypic performance

M. A. Meier, G. Xu, M. G. Lopez-Guerrero, G. Li, C. Smith, B. Sigmon, J. R. Herr, J. Alfano, Y. Ge, J. C. Schnable, J. Yang

This study identifies plant genetic loci associated with rhizobiome composition in maize and shows host selection influences microbial abundance under different nitrogen conditions.

bioRxiv · Nov 1, 2021 · PreprintPlant Biology

Feline Papillomavirus Isolate P20 Assembled from Metagenomic Data Isolated from the Human Skin of a House Cat Owner

E. H. Graham, M. S. Adamowicz, P. Angeletti, J. Clarke, S. Fernando, J. R. Herr

The paper assembles a feline papillomavirus isolate from human skin metagenomic data and describes its genome characteristics.

bioRxiv · Nov 1, 2021 · PreprintMicrobiology

The Application of The Skin Virome for Human Identification

E. H. Graham, S. Fernando, J. Clarke, J. R. Herr, M. Adamowicz

This study evaluates the stability and diversity of the human skin virome as a tool for human identification, identifying 59 stable viral markers across three body locations over six months.

bioRxiv · Sep 10, 2021Microbiology

Global distribution and richness of Armillaria and related species inferred from public databases and amplicon sequencing datasets

R. A. Koch, J. R. Herr

The paper estimates global Armillaria species richness and distribution using public sequencing data and ITS markers, finding 50-60 species with highest richness in Eastern Asia.

bioRxiv · Jun 29, 2021Evolutionary Biology

Transcriptomics reveals the mycoparasitic strategy of the mushroom Entoloma abortivum on species of the mushroom Armillaria

R. A. Koch, J. R. Herr

The paper uses transcriptomics to analyze the mycoparasitic interaction between Entoloma abortivum and Armillaria, identifying key genes involved in host recognition and overcoming host defenses.

bioRxiv · Apr 30, 2021Ecology

Rhizosphere Microbiomes in a Historical Maize/Soybean Rotation System respond to Host Species and Nitrogen Fertilization at Genus and Sub-genus Levels

M. A. Meier, M. G. Lopez-Guerrero, M. Guo, M. R. Schmer, J. R. Herr, J. C. Schnable, J. R. Alfano, J. Yang

The paper examines how host plant species and nitrogen fertilization affect rhizosphere microbiomes in maize and soybean, identifying specific microbial taxa responding to these factors.

bioRxiv · Aug 10, 2020Plant Biology