Author

Jared O'Connell

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1

Frequent Co-Authors

Anthony J Cox· 2 shared Ole Schulz-Trieglaff· 2 shared Emma Carlson· 1 shared Matthew M Hims· 1 shared Niall A Gormley· 1 shared Rudy Arthur· 1 shared

Activity by Year

2015-2015 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Anthony J Cox

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2 papers

Recent·Most cited

Rapid Genotype Refinement for Whole-Genome Sequencing Data using Multi-Variate Normal Distributions

Rudy Arthur, Jared O'Connell, Ole Schulz-Trieglaff, Anthony J Cox

The paper introduces a fast genotype refinement method using multivariate normal distributions for whole-genome sequencing data, showing it is hundreds of times faster than existing methods.

bioRxiv · Nov 12, 2015Bioinformatics

NxTrim: optimized trimming of Illumina mate pair reads

Jared O'Connell, Ole Schulz-Trieglaff, Emma Carlson, Matthew M Hims, Niall A Gormley, Anthony J Cox

NxTrim optimizes trimming of Illumina NMP mate pair reads by minimizing data loss, improving bacterial genome de novo assembly.

Bioinformatics · Feb 5, 2015Peer-reviewedBioinformatics