Author

Jimmy Wu

Baylor College of Medicine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:contrastive learning· 1

Frequent Co-Authors

Abirami SanthanamiD· 2 shared Aparna KrishnavajhalaiD· 2 shared Donna Marie MuznyiD· 2 shared Emmanuel Urquieta· 2 shared HarshaVardhan DoddapaneniiD· 2 shared Kavya KottapalliiD· 2 shared Kimberly WalkeriD· 2 shared Marie‐Claude GingrasiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Abirami SanthanamORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Microbial Dynamics Across Commercial Spaceflights of Varying Duration

Aparna Krishnavajhala, Marie‐Claude Gingras, Tasha M. Santiago-Rodriguez, Yi Chen, Dilrukshi Bandaranaike, Sravya Venkata Bhamidipati, Qin Xiang, Kavya Kottapalli, Zeineen Momin, Abirami Santhanam, Kimberly Walker, Qiaoyan Wang, S. Michelle Griffin, Michał M. Masternak, Mathew C. Ross, , HarshaVardhan Doddapaneni

This study examines microbiome and immune changes in astronauts after short and long-duration spaceflights, finding stable gut and oral microbiomes but transient skin microbiome shifts and immune activation.

bioRxiv · Oct 13, 2026 · PreprintMicrobiology

Multi-Omics Characterization of Human Molecular Responses to Spaceflight Across Two Independent Missions

Abirami Santhanam, Zeineen Momin, Xiang Qin, Qiaoyan Wang, Aparna Krishnavajhala, Qi Jiang, Kimberly Walker, Divya Kalra, Marie‐Claude Gingras, Hsu Chao, Kavya Kottapalli, Sravya Venkata Bhamidipati, Mishfak A. M. Mansoor, Sarah Ashiqueali, S. Michelle Griffin, , HarshaVardhan Doddapaneni

This study analyzes multi-omics data from two spaceflight missions to identify molecular changes in immune, skeletal, and vascular systems, providing insights for mitigating health risks during space travel.

bioRxiv · Jun 4, 2026 · PreprintMolecular Biology

DINOcell: Learning Generalizable Perturbation Effects through Self-Distillation

Jonathan Li, Nilgun Tasdemir, Sofia Kyriazopoulou-Panagiotopoulou, Sophie Xu, Allyson J. Merrell, Josephine Susanto, Ashley A. Cass, David DeTomaso, Holly Steach, Julie C. Chow, Li Wang, Neal G. Ravindra, Aram Kang, Grace X. Y. Zheng, Mary Chua, , Amaro N Taylor-Weiner

DINOcell predicts cellular responses to perturbations using self-distillation in single-cell transcriptomics, outperforming baselines for single and combination gene effects.

bioRxiv · Dec 19, 2025 · PreprintBioinformatics