Author

Julie C. Chow

University of California, DavisORCID 0000-0003-1900-9737Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Fereydoun HormozdiariiD· 2 shared Aaron R. CooperiD· 1 shared Adam Barner· 1 shared Allyson J. MerrelliD· 1 shared Amaro N Taylor-WeineriD· 1 shared Andrea Fua· 1 shared Andrew Cardozo· 1 shared Angela C. BoroughsiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Fereydoun HormozdiariORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 19, 2025

DINOcell: Learning Generalizable Perturbation Effects through Self-Distillation

Jonathan Li, Nilgun Tasdemir, Sofia Kyriazopoulou-Panagiotopoulou…·Amaro N Taylor-Weiner

DINOcell predicts cellular responses to perturbations using self-distillation in single-cell transcriptomics, outperforming baselines for single and combination gene effects.

DOI 10.64898/2025.12.16.694747

scRNA-seqdeep learning

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BioinformaticsbioRxivPreprintJul 4, 2023

Identification of critical cell-types using genetic modules: A case study of neurodevelopmental disorders

Julie C. Chow, Markéta Tomková, Ashleigh Thomas…·Fereydoun Hormozdiari

The paper introduces MoToCC, a method to identify critical cell-types associated with neurodevelopmental disorders using genetic modules and single-cell data.

DOI 10.1101/2023.07.04.547726

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2022

MAGI-MS: Multiple seed-centric module discovery

Julie C. Chow, Ryan Zhou, Fereydoun Hormozdiari

MAGI-MS identifies genetic modules enriched in disease-relevant genes by integrating multiple seed genes associated with neurodevelopmental disorders.

DOI 10.1093/bioadv/vbac025

statistical modelgene regulatory network inference

𝕏 PostBluesky