Author

Jinyi Liu

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Changxiao Yang· 1 shared Fei NiiD· 1 shared Haoyu WangiD· 1 shared Huishan Diao· 1 shared Jiajie PengiD· 1 shared Jianye HaoiD· 1 shared Luhuan YeiD· 1 shared Mingzhi LiiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Changxiao Yang

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2 papers

Recent·Most cited

CellAgent: LLM-Driven Multi-Agent Framework for Natural Language-Based Single-Cell Analysis

Yihang Xiao, Jinyi Liu, Yan Zheng, Shaoqing Jiao, Jianye Hao, Xiaohan Xie, Mingzhi Li, Ruitao Wang, Fei Ni, Yuxiao Li, Zhen Wang, Xuequn Shang, Zhijie Bao, Changxiao Yang, Jiajie Peng

CellAgent uses an LLM-driven multi-agent framework to automate scRNA-seq and spatial transcriptomics analysis through natural language interactions, achieving 60% efficiency improvement over manual methods.

bioRxiv · May 13, 2024 · PreprintBioinformatics

Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat

Yuyun Zhang, Zijuan Li, Jinyi Liu, Yu’e Zhang, Luhuan Ye, Yuan Peng, Haoyu Wang, Huishan Diao, Yu Ma, Tengfei Tang, Yilin Xie, Tengfei Tang, Yili Zhuang, Wan Teng, Yiping Tong, , Yijing Zhang

This study identifies how transposable elements shape subgenome-convergent and -divergent transcription in common wheat by analyzing TFBS and TE evolution.

Nature Communications · Nov 14, 2022Peer-reviewedBioinformatics