Author

Jinyu Hou

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Research Focus:perturbation response prediction· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Caleb N. EllingtoniD· 1 shared Dian LiiD· 1 shared Eric P. XingiD· 1 shared Hartland Warren JacksoniD· 1 shared Hongyi WangiD· 1 shared Kieran R. CampbelliD· 1 shared Le SongiD· 1 shared Lee Sunyun· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Caleb N. EllingtonORCID

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2 papers

Recent·Most cited

Scaling Dense Representations for Single Cell with Transcriptome-Scale Context

Nicholas Ho, Caleb N. Ellington, Jinyu Hou, Sohan Addagudi, Shentong Mo, Tianhua Tao, Dian Li, Yonghao Zhuang, Hongyi Wang, Xingyi Cheng, Le Song, Eric P. Xing

The paper introduces AIDO.Cell, a series of dense Transformer models pre-trained on human single-cell RNA-seq data, achieving state-of-the-art results in clustering, classification, and perturbation modeling.

bioRxiv · Nov 28, 2024 · PreprintBioinformatics

Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data

Michael J. Geuenich, Jinyu Hou, Lee Sunyun, Shanza Ayub, Hartland Warren Jackson, Kieran R. Campbell

Astir assigns cell identities to single-cell imaging and proteomic data by integrating prior knowledge, outperforming existing methods in accuracy and scalability.

Cell Systems · Sep 17, 2021Peer-reviewedBioinformatics