Author

Johanna Brodin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:virus· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Fabio Zanini· 3 shared Jan Albert· 3 shared Richard Neher· 3 shared Christa Lanz· 1 shared Goran Bratt· 1 shared Lina Thebo· 1 shared Vadim Puller· 1 shared

Activity by Year

2016-2016 · peak 3/yr

Co-Author Collaboration Network

7 top collaborators · 18 mutual co-author links

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3 shared papersGenomics

Fabio Zanini

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing

Fabio Zanini, Johanna Brodin, Jan Albert, Richard Neher

This study evaluates error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing, finding rare mutations down to 0.2% can be detected.

bioRxiv · Sep 25, 2016Genomics

In-vivo mutation rates and fitness landscape of HIV-1

Fabio Zanini, Vadim Puller, Johanna Brodin, Jan Albert, Richard Neher

The paper estimates mutation rates and fitness costs of HIV-1 mutations using longitudinal sequencing data, finding universal fitness landscape patterns across patients.

bioRxiv · Jul 1, 2016Evolutionary Biology

Establishment and stability of the latent HIV-1 DNA reservoir

Johanna Brodin, Fabio Zanini, Lina Thebo, Christa Lanz, Goran Bratt, Richard Neher, Jan Albert

The paper analyzes HIV-1 DNA reservoirs during suppressive ART and finds that most viral DNA sequences are similar to pre-treatment RNA sequences, suggesting ART halts viral turnover rather than persistent replication.

bioRxiv · May 23, 2016Microbiology