Author

Johannes Soeding

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Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Mark Heron· 1 shared Matthias Siebert· 1 shared

Activity by Year

2016-2020 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 0 mutual co-author links

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1 shared paperMolecular Biology

Mark Heron

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2 papers

Recent·Most cited

Deconvolving nuclesome binding energy from experimental errors

Mark Heron, Johannes Soeding

The paper develops an integrated model to deconvolve experimental biases from nucleosome binding preferences using MNase-Seq and CC-Seq data.

bioRxiv · Feb 20, 2020 · PreprintMolecular Biology

Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences

Matthias Siebert, Johannes Soeding

This paper introduces Bayesian Markov models (BMMs) for motif discovery, showing they outperform PWMs in predicting regulatory motifs across multiple datasets.

bioRxiv · Apr 8, 2016Bioinformatics