Sequence-to-graph alignment based copy number calling using a network flow formulation
Hugo Magalhães, Jonas Weber, Gunnar W. Klau, Tobias Marschall, Timofey Prodanov
This paper introduces Floco, a network flow-based method for copy number calling on genome graphs, improving accuracy by up to 43% compared to read depth estimation.
bioRxiv · Nov 21, 2025 · PreprintBioinformatics