Author

Joshua L. Warren

Yale University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Chieh-Yin WuiD· 1 shared H Y LiniD· 1 shared Ted CoheniD· 1 shared Yu LaniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

Chieh-Yin WuORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

A comparison of scalable approaches for the pairwise analysis of large pathogen genomic and spatial datasets: an application to studying Mycobacterium tuberculosis transmission

Yu Lan, Chieh-Yin Wu, H Y Lin, Ted Cohen, Joshua L. Warren

The paper compares case-control and divide-and-conquer methods for efficient pairwise analysis of large pathogen genomic and spatial datasets, finding the case-control approach more robust for estimating transmission associations.

bioRxiv · May 21, 2026 · PreprintMicrobiology