Author

Joshua Sodicoff

University of Chicago

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1 Organism:E. coli· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Chao GaoiD· 1 shared David PincusiD· 1 shared Evan Z. MacoskoiD· 1 shared Jialin LiuiD· 1 shared Jinghan Lin· 1 shared Joshua D. WelchiD· 1 shared Omer GranekiD· 1 shared Seppe KuehniD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Chao GaoORCID

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2 papers

Recent·Most cited

Natural Selection in the Wake of Catastrophe

Jinghan Lin, Omer Granek, Joshua Sodicoff, Seppe Kuehn, David Pincus, Vincenzo Vitelli

This paper develops a data-validated theory of natural selection after catastrophe, showing mean fitness relaxes inversely with time and follows Levenberg-Marquardt optimization in E. coli.

bioRxiv · Jun 11, 2026 · PreprintEvolutionary Biology

Jointly Defining Cell Types from Multiple Single-Cell Datasets Using LIGER

Jialin Liu, Chao Gao, Joshua Sodicoff, Velina Kozareva, Evan Z. Macosko, Joshua D. Welch

The paper provides a protocol for using LIGER to jointly define cell types from multiple single-cell datasets, including RNA-seq and ATAC-seq data.

Nature Protocols · Oct 12, 2020Peer-reviewedBioinformatics