Author

Joshua T. Burrows

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Bernhard Ørn PalssoniD· 2 shared Daniel Craig ZielinskiiD· 2 shared Allister Quizon· 1 shared Anand V. SastryiD· 1 shared Cameron R. Lamoureux· 1 shared Carl Johan SundbergiD· 1 shared Eric B. EmanuelssoniD· 1 shared Gaoyuan LiiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersPhysiology

Bernhard Ørn PalssonORCID

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2 papers

Recent·Most cited

Transcriptomic Profiling of scWAT Reveals Reduced Lipid-Associated Macrophage Signatures in Long-Term Endurance- and Resistance-Trained Athletes

Eric B. Emanuelsson, Stefan Markus Reitzner, Allister Quizon, Joshua T. Burrows, Merve Elmastas, Jutta Jalkanen, Sean Perez, Hampus Gilljam, Maléne E. Lindholm, Jessica Norrbom, Bernhard Ørn Palsson, Daniel Craig Zielinski, Mikael Rydén, Mark A. Chapman, Carl Johan Sundberg

The paper analyzes scWAT transcriptomes of long-term trained and untrained adults, finding sex-specific molecular adaptations linked to metabolic health.

bioRxiv · Nov 7, 2025 · PreprintPhysiology

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

Anand V. Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R. Lamoureux, Gaoyuan Li, Joshua T. Burrows, Siddharth Chauhan, Zachary B. Haiman, Tahani Al Bulushi, Yara Seif, Bernhard Ørn Palsson, Daniel Craig Zielinski

The paper develops a workflow to reconstruct dynamic transcriptional regulatory networks from public gene expression data using Bacillus subtilis as a case study.

PLoS Computational Biology · Oct 23, 2024Peer-reviewedBioinformatics