PLAGUE: Improved confidence plasmid reconstruction from short read assemblies
Karolina Kozubal, Faruk Dube, Amar Mujkic, Enrique Joffré, Lionel Guy, Helen H. Wang, Luisa Warchavchik Hugerth
PLAGUE improves plasmid detection accuracy by reducing false positives in short-read assemblies while maintaining sensitivity.
bioRxiv · Jul 10, 2026 · PreprintMicrobiology