Unsupervised Spatial Embedded Deep Representation of Spatial Transcriptomics
Huazhu Fu, Hang Xu, Kelvin Chong, Mengwei Li, Kok Siong Ang, Hong Kai Lee, Jingjing Ling, Ao Chen, Ling Shao, Longqi Liu, Jinmiao Chen
SEDR couples a deep autoencoder over expression with a variational graph autoencoder over position, improving clustering in dorsolateral prefrontal cortex and splitting a visually uniform breast tumour region.
bioRxiv · Jun 15, 2021 · PreprintBioinformatics