Benchmarking SNP-Calling Accuracy Against Known Citrus Pedigrees Reveals Pangenome Advantages Over Linear References
Ryan D. Kuster, Patrick Sisler, Khushwant Singh, Lu Yin, Shade Niece, Robert R. Krueger, Chris D Dardick, Manjunath L. Keremane, Chandrika Ramadugu, Margaret E. Staton
The paper benchmarks SNP-calling accuracy using pangenomes and linear references in citrus hybrids, finding improved performance with pangenome graphs in haplotype reconstruction.
bioRxiv · Apr 9, 2026 · PreprintGenomics