An Unsupervised Graph Embeddings Approach to Multiplex Immunofluorescence Image Exploration
C. Innocenti, Z. Zhang, B. Selvaraj, I. Gaffney, M. Frangos, J. Cohen-Setton, L. A. L. Dillon, M. J. Surace, C. Pedrinaci, J. Hipp, K. Baykaner
This paper introduces GraphITE, a deep learning pipeline that transforms multiplex immunofluorescence data into graph embeddings for exploratory analysis of tumor microenvironment patterns.
bioRxiv · Jun 9, 2021 · PreprintPathology