L. S. Kubatko

On the effects of selection and mutation on species tree inference

The paper investigates how selection and mutation affect species tree inference by deriving a coalescent model that includes these factors and shows they have a small impact on inference.

Inferring Patterns of Hybridization and Polyploidy in the Plant Genus Penstemon (Plantaginaceae)

This study investigates hybridization and polyploidy in Penstemon subsections using phylogenetic methods to estimate species networks and assess taxonomic hypotheses.

HyDe: a Python package for genome-scale hybridization detection

HyDe detects hybridization using phylogenetic invariants from genomic data, distinguishing hybrids and gene flow in simulated and empirical datasets.