Author

Loïc Couderc

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:metagenomics· 1

Frequent Co-Authors

Hélène TouzetiD· 2 shared Areski FlissiiD· 1 shared Erwan GuegueniD· 1 shared Guillemette MarotiD· 1 shared Guy CondemineiD· 1 shared Jacques PédroniD· 1 shared Julie BaltenneckiD· 1 shared Marie‐Anne BarnyiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Hélène TouzetORCID

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2 papers

Recent·Most cited

Comparative essentialome analysis of six Pectobacteriaceae strains using the TNSEEK pipeline identifies conserved and strain-specific fitness determinants

Julie Baltenneck, Loïc Couderc, Jacques Pédron, Guillemette Marot, Areski Flissi, Hélène Touzet, Erwan Gueguen, Marie‐Anne Barny, Guy Condemine

The paper develops TNSEEK, a pipeline for analyzing Tn-seq data across multiple bacterial strains, identifying conserved and strain-specific essential genes in Pectobacteriaceae.

Microbial Genomics · Sep 11, 2026Peer-reviewedGenomics

MATAM: Reconstruction Of Phylogenetic Marker Genes From Short Sequencing Reads In Metagenomes

Pierre Péricard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet

MATAM improves taxonomic assignment in metagenomics by accurately assembling short reads into marker genes, outperforming existing methods in error rates and genome recovery.

Bioinformatics · Oct 10, 2017Peer-reviewedBioinformatics