Author

M. Khodaei

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:DNA methylation· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:phylogenetics / evolution· 2 Organism:rat· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

P. Beerli· 2 shared M. Owen· 1 shared S. V. Edwards· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 2 mutual co-author links

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2 shared papersEvolutionary Biology

P. Beerli

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2 papers

Recent·Most cited

Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling

M. Khodaei, S. V. Edwards, P. Beerli

The paper introduces an alignment-free method using probabilistic topic modeling to infer genome-wide phylogenies and evaluates its performance on simulated and biological datasets.

bioRxiv · Dec 20, 2023Evolutionary Biology

Geodesics to characterize the phylogenetic landscape

M. Khodaei, M. Owen, P. Beerli

This paper introduces a method to generate and visualize phylogenetic treespace using geodesics, finding high likelihood trees not discovered by traditional methods.

bioRxiv · May 11, 2022Evolutionary Biology