M. Sanderson

A new (old) approach to genotype-based phylogenomic inference within species, with an example from the saguaro cactus (Carnegiea gigantea)

The paper re-examines polymorphism parsimony for diploid genotype data, applies it to saguaro cactus populations, and finds congruence with SVDquartets trees.

Terraces in Gene Tree Reconciliation-Based Species Tree Inference

The paper analyzes terraces in gene tree reconciliation-based species tree inference, showing how incomplete gene trees can lead to multiple optimal species trees with identical scores.