Author

Marc Collinet

Ifremer

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Biology Disciplines

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Ecology· 1

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:fluorescence / live-cell microscopy· 1 Assay:imaging· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Béatrice Porcon· 1 shared Caroline GorzerinoiD· 1 shared Éric ÉdelineiD· 1 shared François MartignaciD· 1 shared Hugo Walter· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperEcology

Béatrice Porcon

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1 paper

Recent·Most cited

PlanktonFlow : hands-on deep-learning classification of plankton images for biologists

Hugo Walter, Caroline Gorzerino, Marc Collinet, Béatrice Porcon, François Martignac, Éric Édeline

PlanktonFlow is a Python pipeline that simplifies deep-learning classification of plankton images, demonstrating that EfficientNet-B5 outperforms other CNNs and EcoTaxa in classification accuracy.

bioRxiv · Sep 19, 2025 · PreprintEcology