Author

Matthew L Cotten

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:plant (other)· 1 Approach:statistical model· 1

Frequent Co-Authors

Bas B. Oude Munnink· 1 shared Dirk-Dominic Dolle· 1 shared Guy Thwaites· 1 shared Jared T Simpson· 1 shared Juliet E. Bryant· 1 shared Lia van der Hoek· 1 shared Maia A Rabaa· 1 shared Mark Woolhouse· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Bas B. Oude Munnink

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2 papers

Recent·Most cited

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

Dirk-Dominic Dolle, Zhicheng Liu, Matthew L Cotten, Jared T Simpson, Zamin Iqbal, Richard Durbin, Shane McCarthy, Thomas Keane

This paper introduces a population BWT data structure to efficiently store and analyze sequencing reads from thousands of human genomes, enabling variant calling and viral detection.

bioRxiv · Jun 22, 2016Genomics

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

My V.T. Phan, Pham Hong Anh, Nguyen Van Cuong, Bas B. Oude Munnink, Lia van der Hoek, Phuc Tran My, Tue Ngo Tri, Juliet E. Bryant, Stephen Baker, Guy Thwaites, Mark Woolhouse, Paul Kellam, Maia A Rabaa, Matthew L Cotten

The paper uses deep sequencing to analyze human and porcine stool samples, revealing rotavirus diversity and potential zoonotic transmission in Vietnam.

bioRxiv · Jun 14, 2016Genomics