Author

Matthew W. Funk

University of Massachusetts Chan Medical School

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Jeffrey M. KiddiD· 1 shared Lingfei WangiD· 1 shared Yuhe WangiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

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3 top collaborators · 1 mutual co-author link

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1 shared paperGenomics

Jeffrey M. KiddORCID

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2 papers

Recent·Most cited

Airqtl dissects cell state-specific causal gene regulatory networks with efficient single-cell eQTL mapping

Matthew W. Funk, Yuhe Wang, Lingfei Wang

Airqtl accelerates single-cell eQTL mapping and enables cell state-specific causal gene regulatory network inference using efficient linear mixed models.

Nature Communications · Dec 10, 2025Peer-reviewedGenetics

A variant centric analysis of allele sharing in dogs and wolves

Matthew W. Funk, Jeffrey M. Kidd

The paper analyzes allele sharing among wolves, village dogs, and breed dogs using GeoVar, finding significant genetic variation and shared variants across these groups.

Genes · Sep 5, 2024Peer-reviewedGenomics