Does the choice of nucleotide substitution models matter topologically?
Michael Hoff, Stefan Peter Orf, Benedikt Johannes Riehm, Diego Darriba, Alexandros Stamatakis
The paper tests if nucleotide substitution models affect tree topologies using ML inference on 39 datasets, finding that model selection can lead to substantial topological differences in about 5% of cases.
bioRxiv · Feb 26, 2016Bioinformatics