euka: Robust detection of eukaryotic taxa from modern and ancient environmental DNA using pangenomic reference graphs.
Nicola Alexandra Vogel, Joshua Daniel Rubin, Mikkel Swartz, Juliette Vlieghe, Peter Wad Sackett, Anders Gorm Pedersen, Mikkel Winther Pedersen, Gabriel Renaud
euka improves taxonomic identification and abundance estimation in ancient eDNA by using pangenomic graphs and maximum-likelihood methods, outperforming existing tools.
bioRxiv · Apr 4, 2023 · PreprintBioinformatics