Author

Naznin Akter

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:large language model· 1

Frequent Co-Authors

Ewy A. MathéiD· 1 shared Mahfuza SharminiD· 1 shared Maruf Islam Shuvo· 1 shared Monjura Afrin RumiiD· 1 shared Shafiul Alam· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Ewy A. MathéORCID

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1 paper

Recent·Most cited

GEO-BERT: A Retrieval augmented LLM Framework for Intelligent Dataset Retrieval from the Gene Expression Omnibus

Maruf Islam Shuvo, Monjura Afrin Rumi, Naznin Akter, Ewy A. Mathé, Shafiul Alam, Mahfuza Sharmin

GEO-BERT improves dataset retrieval from GEO by using a retrieval-augmented LLM framework with a hierarchical hybrid field-aware system, enhancing semantic search and traditional search performance.

bioRxiv · Oct 21, 2026 · PreprintBioinformatics