Author

Nimish Magre

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Ebtisam Alshehri· 1 shared Fedor GrabiD· 1 shared Mehrtash BabadiiD· 1 shared Stephen M. FlemingiD· 1 shared Steven A. McCarrolliD· 1 shared Yerdos A. OrdabayeviD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ebtisam Alshehri

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

A supervised ontology-aware cell annotation method forsingle-cell transcriptomic data

Nimish Magre, Ebtisam Alshehri, Fedor Grab, Yerdos A. Ordabayev, Steven A. McCarroll, Mehrtash Babadi, Stephen M. Fleming

The paper introduces SOCAM, a supervised cell annotation method that enforces ontological consistency and improves performance using a probability propagation strategy and logistic regression model.

bioRxiv · Jan 14, 2026 · PreprintBioinformatics