Author

Ningyue Liang

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Organism:human· 2 Approach:large language model· 2 Organism:mouse· 2 Approach:transformer / foundation model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Arnau Marin‐LlobetiD· 3 shared Jia Liu BiD· 3 shared Jongmin Baek· 3 shared Xinhe ZhangiD· 3 shared Zuwan LiniD· 3 shared Almir AljovićiD· 2 shared Jaeyong LeeiD· 2 shared Na LiiD· 2 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Arnau Marin‐LlobetORCID

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3 papers

Recent·Most cited

An autonomous AI agent for universal behavior analysis

Almir Aljović, Zuwan Lin, Wenbo Wang, Xinhe Zhang, Arnau Marin‐Llobet, Ningyue Liang, Bradley Canales, Jaeyong Lee, Jongmin Baek, Ren Liu, Catherine Li, Na Li, Jia Liu B

BehaveAgent automates cross-species behavior analysis from video input using multimodal AI without manual intervention or retraining, enabling zero-shot reasoning and end-to-end analysis.

bioRxiv · May 15, 2025 · PreprintNeuroscience

Spatial transcriptomics AI agent charts hPSC-pancreas maturation in vivo

Zuwan Lin, Wenbo Wang, Arnau Marin‐Llobet, Qifu Li, Samuel D. Pollock, Xin Sui, Almir Aljović, Jaeyong Lee, Jongmin Baek, Ningyue Liang, Xinhe Zhang, Connie Kangni Wang, Jiahao Huang, Mai Liu, Zihan Gao, , Jia Liu B

The paper introduces STAgent, an AI tool that automates spatial transcriptomics analysis, revealing in vivo maturation of human stem cell-derived pancreatic cells.

bioRxiv · Apr 1, 2025 · PreprintGenomics

Spike sorting AI agent

Zuwan Lin, Arnau Marin‐Llobet, Jongmin Baek, Yichun He, Jaeyong Lee, Wenbo Wang, Xinhe Zhang, Ariel J. Lee, Ningyue Liang, Jin Du, Jie Ding, Na Li, Jia Liu B

SpikeAgent automates spike sorting with a multimodal LLM-based AI agent, achieving curation consistency equal to or exceeding human experts and drastically reducing expertise barriers.

bioRxiv · Feb 11, 2025 · PreprintNeuroscience