Inferring Spatially Resolved Transcriptomics Data from Whole Slide Images for the Assessment of Colorectal Tumor Metastasis: A Feasibility Study
M. Fatemi, E. Feng, C. Sharma, Z. Azher, T. Goel, O. Ramwala, S. Palisoul, R. Barney, L. Perreard, F. Kolling, L. A. Salas, B. Christensen, G. Tsongalis, L. Vaickus, J. Levy
This study investigates using deep learning to predict spatial transcriptomics data from whole slide images to assess colorectal tumor metastasis, finding that convolutional networks outperform transformer and graph-based models.
bioRxiv · Nov 24, 2022 · PreprintPathology