Author

Paul P Gardner

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Assay:proteomics· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Dorien S Coray· 1 shared Hisham Eldai· 1 shared Jack A Heinemann· 1 shared Lars Barquist· 1 shared Nicole E Wheeler· 1 shared Nicole Wheeler· 1 shared Robert A Kingsley· 1 shared

Activity by Year

2014-2016 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Dorien S Coray

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3 papers

Recent·Most cited

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes

Nicole E Wheeler, Lars Barquist, Robert A Kingsley, Paul P Gardner

The paper introduces a hidden Markov model-based method, delta-bitscore, to identify functional divergence in orthologous genes and applies it to study host adaptation in Salmonella enterica.

Bioinformatics · Aug 8, 2016Peer-reviewedBioinformatics

Comparative distribution of antisense-RNA regulated toxin-antitoxin systems

Dorien S Coray, Nicole Wheeler, Jack A Heinemann, Paul P Gardner

The paper compares the distribution of type I, II, and III toxin-antitoxin systems across bacterial genomes and discusses factors influencing their distribution.

bioRxiv · Jun 28, 2016Bioinformatics

Annotating RNA motifs in sequences and alignments

Paul P Gardner, Hisham Eldai

This paper introduces a bioinformatic approach to characterize RNA motifs and presents a new database, RMfam, for their annotation and functional analysis.

Nucleic Acids Research · Dec 17, 2014Peer-reviewedBioinformatics