Paula Tataru

Regmex, Motif analysis in ranked lists of sequences

Regmex identifies overrepresented motifs in ranked sequence lists using regular expressions and Markov models, with options for enrichment evaluation.

Inference of distribution of fitness effects and proportion of adaptive substitutions from polymorphism data

This paper develops a method to infer the distribution of fitness effects and proportion of adaptive substitutions from polymorphism data alone, showing it provides more reliable estimates than methods relying on divergence data.

Inference under a Wright-Fisher model using an accurate beta approximation

The paper introduces an improved approximation for allele frequency distribution under the Wright-Fisher model, showing better performance in inferring divergence times between populations.

diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals

diCal-IBD detects identity-by-descent tracts between unrelated individuals with higher recall and precision than existing methods.