Author

Prathima B. Nagendra

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Archana BalaniD· 1 shared Elana Judith FertigiD· 1 shared Jiaying LaiiD· 1 shared Kathleen NolleriD· 1 shared Laura DeLong WoodiD· 1 shared Luciane Tsukamoto KagoharaiD· 1 shared Rachel KarchiniD· 1 shared Yi Yang· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Archana BalanORCID

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1 paper

Recent·Most cited

Reconstructing clone-resolved transcriptional programs from bulk tumor sequencing

Jiaying Lai, Yi Yang, Kathleen Noller, YunZhou Liu, Archana Balan, Prathima B. Nagendra, Luciane Tsukamoto Kagohara, Elana Judith Fertig, Laura DeLong Wood, Rachel Karchin

PICTographPlus infers clone-resolved transcriptional programs from bulk RNA-seq by integrating clonal phylogenies and proportions, achieving high accuracy in recovering clone-level expression and localizing pathway changes.

bioRxiv · Jun 5, 2026 · PreprintGenomics