Ultra-efficient, unified discovery from microbial sequencing with SPLASH and precise statistical assembly
George Henderson, Adam Gudyś, Tavor Z. Baharav, Punit Sundaramurthy, Marek Kokot, Peter Lincoln Wang, Sebastian Deorowicz, Allison F. Carey, Julia Salzman
The paper introduces SPLASH and compactors to efficiently discover microbial genetic elements and perform strain typing without reference genomes.
bioRxiv · Jan 18, 2024 · PreprintBioinformatics