Author

R. J. Harrigan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:ecology & biodiversity· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

F. D. Schneider· 2 shared M. Lin· 2 shared R. K. Wayne· 2 shared R. S. Meyer· 2 shared T. B. Smith· 2 shared A. E. Garcia-Vedrenne· 1 shared A. H. Thornhill· 1 shared A. L. Simons· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersEcology

F. D. Schneider

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Author profile →

4 papers

Recent·Most cited

A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia)

W. L. E. Tsai, M. Escalona, K. L. Garrett, R. S. Terrill, R. Sahasrabudhe, O. Nguyen, E. Beraut, W. Seligmann, R. J. Harrigan, J. E. McCormack, M. E. Alfaro, T. B. Smith, R. A. Bay

The paper presents a high-quality genome assembly for the Yellow Warbler using HiFi and Omni-C sequencing, providing a resource for studying gene flow and conservation.

bioRxiv · Jan 10, 2024Evolutionary Biology

From zero to infinity: minimum to maximum diversity of the planet by spatio-parametric Rao's quadratic entropy

D. Rocchini, M. Marcantonio, D. Da Re, G. Bacaro, E. Feoli, G. M. Foody, R. J. Harrigan, D. Kleijn, M. Iannacito, J. Lenoir, M. Lin, M. Malavasi, E. Marchetto, R. S. Meyer, V. Moudry, , C. Ricotta

This paper generalizes Rao's quadratic entropy to create a parametric measure for satellite-based ecosystem diversity, integrating abundance and spectral distance.

bioRxiv · Jan 23, 2021Ecology

A Biodiversity Composition Map of California Derived from Environmental DNA Metabarcoding and Earth Observation

M. Lin, A. L. Simons, E. E. Curd, R. J. Harrigan, F. D. Schneider, D. V. Ruiz-Ramos, Z. Gold, M. G. Osborne, S. Shirazi, T. M. Schweizer, T. N. Moore, E. A. Fox, R. Turba, A. E. Garcia-Vedrenne, S. K. Helman, , R. S. Meyer

The paper integrates environmental DNA and Earth observation to create a biodiversity map of California, showing strong community-environment correlations and environmental filtering effects.

bioRxiv · Jun 19, 2020Ecology

Identifying Migrant Origins Using Genetics, Isotopes, and Habitat Suitability

K. C. Ruegg, E. Anderson, R. J. Harrigan, K. L. Paxton, J. Kelly, F. Moore, T. B. Smith

The paper develops a method combining genetics, isotopes, and habitat suitability to infer migratory origins, showing improved accuracy when integrated.

bioRxiv · Nov 3, 2016Ecology