Systematic comparative benchmarking of computational methods for the detection of transposable elements in long-read sequencing data
Nogayhan Seymen, Renato Santos, Ramya Lakshmanan, Simon D. Topp, Ammar Al‐Chalabi, Ahmad Al Khleifat, Gerome D. Breen, Richard Dobson, John Peter Quinn, Mohammad Mahdi Karimi, Alfredo Iacoangeli
This study benchmarks TE detection tools on long-read data, showing significant variation in performance and highlighting tool-specific strengths and limitations.
bioRxiv · Sep 29, 2025 · PreprintBioinformatics