Author
Harvard University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Mutual co-authors in cluster
6 papers
Recent·Most cited
Ryan Kim, Declan Smith, Liudmilla Rubbi, Gregory Kislik, Matteo A. Pellegrini
This study shows that ultra low-coverage whole genome sequencing can reliably estimate canine inbreeding using runs of homozygosity and inbreeding coefficients.
bioRxiv · Apr 7, 2026 · PreprintBioinformatics
Ryan Kim, Beomsoo Kim, Hyunjin Kim, Sang Lee
The paper introduces cfRNA-ICL, a model trained on synthetic data generated from a biologically grounded SCM, showing improved performance in cancer classification tasks compared to generic models.
bioRxiv · Dec 13, 2025 · PreprintGenomics
Yuxuan Wang, Margaret Sunitha Selvaraj, Xihao Li, Zilin Li, Jacob A. Holdcraft, Donna K. Arnett, Joshua C. Bis, John Blangero, Eric Boerwinkle, Donald W. Bowden, Brian E. Cade, Jenna C. Carlson, April P. Carson, Yii-Der Ida Chen, Joanne E. Curran, , Gina Marie Peloso
The paper identifies 83 rare lncRNA variant sets associated with blood lipid levels using WGS data from the TOPMed program and validates some in UK Biobank data.
The American Journal of Human Genetics · Oct 1, 2023Peer-reviewedGenetic & Genomic Medicine
Goo Jun, Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark Chaisson, Nathan Pankratz, Vipin K. Menon, William J. Salerno, Olga A. Krasheninina, Albert V. Smith, John Lane, Tom W. Blackwell, Hyun Min Kang, Sejal Salvi, Qingchang Meng, , Fritz Joachim Sedlazeck
The paper presents a comprehensive catalog of structural variants across 138,134 individuals, identifying novel variants and their associations with cardio-metabolic and hematologic traits.
bioRxiv · Jan 25, 2023 · PreprintGenomics
Margaret Sunitha Selvaraj, Xihao Li, Zilin Li, Akhil Pampana, David Y. Zhang, Joseph Park, Stella W. Aslibekyan, Joshua C. Bis, Jennifer A. Brody, Brian E. Cade, Lee‐Ming Chuang, Ren‐Hua Chung, Joanne E. Curran, Lisa de las Fuentes, Paul S. de Vries, , Najib Ayas
The paper performs whole genome sequence analysis of plasma lipid levels in 66,329 individuals, identifying new lipid-associated alleles, including rare non-coding variants.
Nature Communications · Oct 11, 2022Peer-reviewedGenetics
Hyunghoon Cho, Sean Simmons, Ryan Kim, Bonnie Berger
This paper introduces privacy-preserving query-answering mechanisms for biomedical databases that maximize utility while achieving formal privacy guarantees, extending optimality results to asymmetric utility functions.
Cell Systems · Apr 30, 2020Peer-reviewedBioinformatics