Escherichia coli clonobiome: assessing the strains diversity in feces and urine by deep amplicon sequencing
S. G. Shevchenko, M. Radey, D. I. Kisiela, V. Tchesnokova, E. V. Sokurenko
This paper develops a method to assess E. coli clonal diversity in fecal and urinary samples using deep amplicon sequencing and applies it to study the pandemic strain ST131-H30.
bioRxiv · Aug 14, 2019Microbiology