Author

S. S. Satapathy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4

Signature Assays, Organisms & Methods

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Organism:E. coli· 4 Approach:statistical model· 4 Assay:DNA methylation· 3 Research Focus:chromatin & epigenetic regulation· 2 Organism:mouse· 2 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

P. K. Beura· 4 shared P. Sen· 4 shared R. Aziz· 4 shared S. K. Ray· 4 shared E. Feil· 2 shared M. Dash· 2 shared N. D. Namsa· 2 shared C. Chetia· 1 shared

Activity by Year

2022-2022 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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4 shared papersEvolutionary Biology

P. K. Beura

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Author profile →

4 papers

Recent·Most cited

Synonymous and non-synonymous transitions/transversions vividly disclose purifying selection in Escherichia coli coding sequences

P. K. Beura, R. Aziz, P. Sen, S. Das, N. D. Namsa, E. Feil, S. S. Satapathy, S. K. Ray

The paper develops a method to estimate the ti/tv ratio in E. coli coding sequences by accounting for codon degeneracy and pretermination codons, revealing insights into purifying selection.

bioRxiv · Nov 3, 2022 · PreprintEvolutionary Biology

The transcribed intergenic regions exhibit lower frequency of nucleotide polymorphism than the untranscribed intergenic regions in the genomes of Escherichia coli and Salmonella enterica

P. K. Beura, P. Sen, R. Aziz, S. S. Satapathy, S. K. Ray

This study compares polymorphism frequencies between transcribed and untranscribed intergenic regions in E. coli and S. enterica, finding that transcribed regions have lower polymorphism rates due to repair mechanisms and sequence features.

bioRxiv · Aug 7, 2022Evolutionary Biology

Synonymous polymorphism difference relating to codon degeneracy between co-transcribed genes in the genome of Escherichia coli

P. K. Beura, P. Sen, R. Aziz, C. Chetia, M. Dash, S. S. Satapathy, S. K. Ray

The paper compares synonymous polymorphism in co-transcribed gene pairs in E. coli operons, finding differences in mutation patterns related to codon degeneracy.

bioRxiv · Jul 25, 2022 · PreprintEvolutionary Biology

Modified dN/dS for accounting transition and transversion frequency difference and non-sense substitution in genomes

R. Aziz, P. Sen, P. K. Beura, M. Dash, N. D. Namsa, R. C. Deka, D. Das, E. Feil, S. S. Satapathy, S. K. Ray

The paper modifies the dN/dS ratio calculation to account for transition/transversion rate differences and non-sense substitutions, showing higher dN/dS values in E. coli and S. enterica genes.

bioRxiv · Jan 22, 2022 · PreprintEvolutionary Biology