Author

S. Sarmashghi

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Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

K. Bohmann· 1 shared M. T. P. Gilbert· 1 shared S. Mirarab· 1 shared V. Bafna· 1 shared

Activity by Year

2019-2019 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperEcology

K. Bohmann

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1 paper

Recent·Most cited

Assembly-free and alignment-free sample identification using genome skims

S. Sarmashghi, K. Bohmann, M. T. P. Gilbert, V. Bafna, S. Mirarab

The paper introduces Skmer, an alignment-free tool that uses k-mer decomposition to estimate genomic distances from genome skims, achieving high accuracy in identifying closest matches and inferring phylogeny.

Genome Biology · Feb 13, 2019Peer-reviewedEcology