Author

Shankar Vembu

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Biology Disciplines

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Bioinformatics· 1

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Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Amit G. DeshwariD· 1 shared Christina K. Yung· 1 shared Gun Ho JangiD· 1 shared Lincoln Stein· 1 shared Quaid MorrisiD· 1 shared

Activity by Year

2015-2015 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Amit G. DeshwarORCID

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1 paper

Recent·Most cited

Reconstructing subclonal composition and evolution from whole genome sequencing of tumors

Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris

This paper introduces PhyloWGS, a method for subclonal reconstruction from whole genome sequencing data, showing it can accurately recover subclonal composition, genotype, and phylogeny using both SSMs and CNVs.

Genome Biology · Feb 13, 2015Peer-reviewedBioinformatics