Author

Shaoqi Bei

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:large language model· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Bixia TangiD· 2 shared Demian KongiD· 2 shared Wenming ZhaoiD· 2 shared Yueyue Wu· 2 shared Huangxia Hu· 1 shared Shuying LiuiD· 1 shared Sicheng WuiD· 1 shared Xiaojing GaoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Bixia TangORCID

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2 papers

Recent·Most cited

OmniExtract: An automatic data extraction tool based on Large Language Model and Prompt Engineering

Yibo Wang, Bixia Tang, Sicheng Wu, Shaoqi Bei, Xiaojing Gao, Yueyue Wu, Shuying Liu, Huangxia Hu, Yuyan Meng, Demian Kong, Wenming Zhao

OmniExtract is a data extraction tool using LLM and prompt engineering that achieves high accuracy in extracting structured information from text and tables.

Briefings in Bioinformatics · Sep 1, 2026Peer-reviewedBioinformatics

Dingent: An Easily Deployable Database Retrieval and Integration Agent framework

Demian Kong, Shaoqi Bei, Yueyue Wu, Bixia Tang, Wenming Zhao

Dingent is a configurable agent framework that enables data retrieval from various sources using natural language and provides a web interface, demonstrated across three application scenarios.

bioRxiv · Mar 20, 2026 · PreprintBioinformatics