Author

Shawn J. Cokus

University of California, Los Angeles

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Matteo A. PellegriniiD· 2 shared Aleksey V. ZiminiD· 1 shared Brian B. NadeliD· 1 shared Claudia L. HenriqueziD· 1 shared Daniela PuiuiD· 1 shared David Lopez· 1 shared Jesse A. GarciaiD· 1 shared Joseph Distefano· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Matteo A. PellegriniORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

Victoria L. Sork, Shawn J. Cokus, Sorel T. Fitz‐Gibbon, Aleksey V. Zimin, Daniela Puiu, Jesse A. Garcia, Paul F. Gugger, Claudia L. Henriquez, Ying Zhen, Kirk E. Lohmueller, Matteo A. Pellegrini, Steven L. Salzberg

This study presents a high-quality genome and methylome analysis of Quercus lobata, identifying genomic features linked to oak evolutionary success, including gene duplications and methylation patterns.

Nature Communications · Apr 19, 2022Peer-reviewedGenomics

Growth of the Fucus embryo: insights into wall-mediated cell expansion through mechanics and transcriptomics

Marina Linardić, Shawn J. Cokus, Matteo A. Pellegrini, Siobhan A. Braybrook

The paper investigates cell expansion and proliferation in Fucus embryos, showing correlations between cell wall mechanics, alginate biochemistry, and growth patterns, with transcriptomic data supporting gene expression changes related to wall stiffness.

bioRxiv · Jan 29, 2020 · PreprintDevelopmental Biology

A Novel Uropathogenic Escherichia Coli Genome (strain D3) and Comparative Analysis with Other Uropathogenic and Nonpathogenic Strains

Brian B. Nadel, Shawn J. Cokus, Marco Morselli, Laura J. Marinelli, David Lopez, Robert L. Modlin, Joseph Distefano, Matteo Pellegrini

The paper sequences and analyzes the genome of a uropathogenic E. coli strain, identifying pathogenicity-associated genes and D3-specific transposable elements.

bioRxiv · Oct 4, 2017 · PreprintPathology