Author

Shiying Li

Centre Hospitalier de l’Université de Montréal

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Assay:GWAS summary statistics· 1 Organism:human· 1

Frequent Co-Authors

Alexander BihloiD· 1 shared Bang LiuiD· 1 shared Guy A. RutteriD· 1 shared Johanne TremblayiD· 1 shared Miaozhe HuoiD· 1 shared Pavel HametiD· 1 shared Redha Attaoua· 1 shared Shivam AroraiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Alexander BihloORCID

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2 papers

Recent·Most cited

DisenTE: Sparse Pattern-Context Modeling for Interpretable Translation-Efficiency Matrix Completion

Miaozhe Huo, Yingying Yu, Shiying Li

DisenTE improves translation-efficiency matrix completion by modeling sparse sequence-context patterns, achieving higher accuracy than existing methods.

bioRxiv · Sep 29, 2026 · PreprintBioinformatics

Leveraging hierarchical structures for genetic block interaction studies using the hierarchical transformer

Shiying Li, Shivam Arora, Redha Attaoua, Pavel Hamet, Johanne Tremblay, Alexander Bihlo, Bang Liu, Guy A. Rutter

The paper introduces a hierarchical transformer model to detect genetic block interactions, showing improved performance over traditional methods in simulation and UK Biobank data.

medRxiv · Nov 18, 2024 · PreprintGenetic & Genomic Medicine