Author

Shujian Zheng

The Jackson Laboratory for Genomic Medicine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:metabolomics· 3 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Shuzhao LiiD· 3 shared Joshua M. MitchelliD· 2 shared Maheshwor ThapaiD· 2 shared Yuanye ChiiD· 2 shared Aleksandr Alekseevich SmirnoviD· 1 shared Liang LiiD· 1 shared Xiuxia DuiD· 1 shared Zackary Frohock· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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3 shared papersBiochemistry

Shuzhao LiORCID

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Author profile →

3 papers

Recent·Most cited

Assessing the metabolomics "dark matter" by a detectable khipu model

Yuanye Chi, Joshua M. Mitchell, Shujian Zheng, Maheshwor Thapa, Shuzhao Li

The paper analyzes metabolomics 'dark matter' using a detectable khipu model, showing most abundant features have identifiable ion patterns, while many remain unknown.

Metabolomics · May 24, 2026Peer-reviewedBiochemistry

Constructing a consensus serum metabolome

Yuanye Chi, Joshua M. Mitchell, Maheshwor Thapa, Shujian Zheng, Zackary Frohock, Liang Li, Aleksandr Alekseevich Smirnov, Xiuxia Du, Shuzhao Li

The paper constructs a consensus serum metabolome from over 100,000 mass spectrometry acquisitions, revealing gaps in current databases and improving LC-MS metabolomics annotation.

bioRxiv · May 7, 2025 · PreprintBiochemistry

Generalized tree structure to annotate untargeted metabolomics and stable isotope tracing data

Shuzhao Li, Shujian Zheng

This paper introduces a generalized tree structure and algorithm to annotate ions in metabolomics data and infer neutral mass, implemented as a Python package called khipu.

Analytical Chemistry · Apr 5, 2023Peer-reviewedBioinformatics