Author

Simon J Puglisi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Travis GagieiD· 2 shared Alexander Bowe· 1 shared Christina BoucheriD· 1 shared Keith Belk· 1 shared Martin D Muggli· 1 shared Noelle R Noyes· 1 shared Paul Morley· 1 shared Rober Raymond· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Travis GagieORCID

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2 papers

Recent·Most cited

Succinct Colored de Bruijn Graphs

Keith Belk, Christina Boucher, Alexander Bowe, Travis Gagie, Paul Morley, Martin D Muggli, Noelle R Noyes, Simon J Puglisi, Rober Raymond

The paper introduces a data structure that efficiently represents colored de Bruijn graphs, reducing memory usage for genetic variant detection and genotyping in population-level data.

bioRxiv · Feb 18, 2016Bioinformatics

Searching and Indexing Genomic Databases via Kernelization

Travis Gagie, Simon J Puglisi

This paper surveys the history of using reference genomes and differential regions for genomic database search and indexing, relating it to kernelization in parameterized complexity.

Frontiers in Bioengineering and Biotechnology · Feb 9, 2015Peer-reviewedBioinformatics